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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
DNase-seq
75
ATAC-seq
24
ChIP-seq
5
total RNA-seq
1
small RNA-seq
Assay category
153
DNA accessibility
24
DNA binding
6
Transcription
Target of assay
22
histone
22
histone modification
12
broad histone mark
10
narrow histone mark
2
RNA binding protein
2
transcription factor
Date released
80
June, 2019
64
August, 2021
October, 2019
18
April, 2019
11
May, 2023
6
July, 2019
4
May, 2019
Available data
166
bed narrowPeak
108
bam
108
bigWig
102
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
6
tsv
Organism
183
Homo sapiens
Biosample type
163
tissue
20
primary cell
Organ
627
pancreas
566
connective tissue
524
liver
424
adipose tissue
271
epithelium
219
heart
183
kidney
158
vasculature
154
blood vessel
139
brain
107
artery
66
bone element
54
blood
54
bodily fluid
53
musculature of body
44
limb
29
embryo
18
ureter
16
spleen
8
skeleton
6
eye
1
pericardium
Project
183
AMP
Genome assembly (visualization)
183
GRCh38
107
hg19
Lab
108
AMP-T2D consortium
75
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
month_released!
October, 2019
BIOSAMPLE
ASSAY
183 results
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DNase-seq
ATAC-seq
ChIP-seq
total RNA-seq
small RNA-seq
tissue
kidney
13
75
18
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 5 more…
primary cell
kidney epithelial cell
1
4
1
epithelial cell of proximal tubule
1
2
1
glomerular endothelial cell
1
1
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 3 more…
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