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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
Hi-C
Assay category
1387
Transcription
1127
DNA binding
435
DNA accessibility
22
3D chromatin structure
19
DNA methylation
Date released
10
March, 2020
October, 2019
4
July, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
March, 2019
Available data
18
hic
16
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
3
cool
1
bedpe
Organism
22
Homo sapiens
Biosample type
10
tissue
8
primary cell
2
cell line
2
in vitro differentiated cells
Organ
7
epithelium
7
pancreas
4
blood vessel
4
vasculature
3
brain
3
liver
2
heart
2
musculature of body
1
connective tissue
1
kidney
1
vein
Project
19
AMP
3
HPAP
Genome assembly (visualization)
22
hg19
1
GRCh38
Lab
16
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
3
audit script error
3
inconsistent ontology term
month_released!
October, 2019
BIOSAMPLE
ASSAY
22 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart left ventricle
1
heart right ventricle
1
+ See 3 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
endothelial cell of umbilical vein
1
+ See 3 more…
cell line
EndoC_BH1
1
HepG2
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
See all biosamples
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