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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
Hi-C
Assay category
18
3D chromatin structure
Date released
10
March, 2020
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
March, 2019
Available data
2809
bigWig
2791
bam
1409
bed narrowPeak
1386
tsv
1008
fastq
893
bigBed narrowPeak
289
bed broadPeak
253
bigBed broadPeak
242
bed bed3+
198
tagAlign
19
bed bedMethyl
19
bigBed bedMethyl
18
bedpe bed3+
18
hic
12
bed bed3
7
bed bedgraph
4
hdf5
4
txt
3
cool
3
tar
2
ibed
1
bedpe
Organism
18
Homo sapiens
Biosample type
10
tissue
4
primary cell
2
cell line
2
in vitro differentiated cells
Organ
7
pancreas
5
epithelium
2
blood vessel
2
heart
2
liver
2
musculature of body
2
vasculature
1
kidney
1
vein
Project
15
AMP
3
HPAP
Genome assembly (visualization)
18
hg19
1
GRCh38
Lab
12
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
3
audit script error
3
inconsistent ontology term
month_released!
October, 2019
BIOSAMPLE
ASSAY
18 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart left ventricle
1
heart right ventricle
1
+ See 3 more…
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
See all biosamples
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