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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
44
ATAC-seq
11
ChIP-seq
2
DNase-seq
single cell RNA-seq
Assay category
56
Transcription
46
DNA accessibility
11
DNA binding
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
October, 2019
5
May, 2019
3
July, 2019
2
February, 2020
2
June, 2019
Available data
76
bam
64
bigWig
56
tsv
53
bed narrowPeak
6
tagAlign
5
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
113
Homo sapiens
Biosample type
66
cell line
45
tissue
2
primary cell
Organ
854
pancreas
782
liver
676
connective tissue
490
adipose tissue
419
epithelium
292
heart
260
kidney
197
brain
183
vasculature
177
blood vessel
159
bone element
113
artery
95
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
18
ureter
16
skeleton
11
lung
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
113
AMP
Genome assembly (visualization)
107
GRCh38
72
hg19
Lab
113
AMP-T2D consortium
month_released!
October, 2019
audit.ERROR.category!
inconsistent replicate
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
113 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
5
2
tibial artery
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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