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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
44
ATAC-seq
11
ChIP-seq
2
DNase-seq
Assay category
56
Transcription
46
DNA accessibility
11
DNA binding
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
October, 2019
5
May, 2019
3
July, 2019
August, 2021
2
February, 2020
2
June, 2019
Available data
76
bam
64
bigWig
56
tsv
53
bed narrowPeak
6
tagAlign
5
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
113
Homo sapiens
Biosample type
66
cell line
45
tissue
2
primary cell
Organ
924
pancreas
748
liver
675
connective tissue
489
adipose tissue
483
epithelium
293
heart
200
brain
194
kidney
183
vasculature
177
blood vessel
159
bone element
113
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
29
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
113
AMP
Genome assembly (visualization)
107
GRCh38
72
hg19
Lab
113
AMP-T2D consortium
month_released!
October, 2019
August, 2021
audit.ERROR.category!
inconsistent replicate
BIOSAMPLE
ASSAY
113 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
5
2
tibial artery
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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