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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
547
ChIP-seq
250
total RNA-seq
84
RNA microarray
33
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
4
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
547
DNA binding
254
Transcription
39
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
98
histone modification
97
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
39
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
152
February, 2021
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
35
August, 2021
10
July, 2019
8
February, 2023
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
1
May, 2021
Available data
739
bam
674
bigWig
465
fastq
442
bed narrowPeak
358
bigBed narrowPeak
231
tsv
88
txt
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
4
bed bed3
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
942
Homo sapiens
Biosample type
513
tissue
400
cell line
15
in vitro differentiated cells
14
primary cell
Organ
928
pancreas
783
liver
680
connective tissue
490
adipose tissue
489
epithelium
385
heart
324
kidney
200
brain
189
vasculature
183
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
941
AMP
1
T1D
Genome assembly (visualization)
687
hg19
589
GRCh38
Lab
870
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
27
inconsistent control
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
October, 2019
audit.ERROR.category!
inconsistent replicate
BIOSAMPLE
ASSAY
942 results
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ChIP-seq
total RNA-seq
RNA microarray
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
140
166
20
2
3
1
1
1
1
1
bone element
84
bone tissue
58
right lobe of liver
10
3
1
2
1
2
acetabular part of hip bone
1
1
+ See 11 more…
cell line
HepG2
378
14
1
2
2
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
megakaryocyte
1
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