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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
72
ATAC-seq
4
FAIRE-seq
4
Hi-C
2
DNase-seq
2
total RNA-seq
1
GRO-seq
Assay category
134
DNA binding
78
DNA accessibility
4
3D chromatin structure
2
Transcription
Target of assay
66
histone
66
histone modification
48
transcription factor
34
broad histone mark
32
narrow histone mark
20
control
6
RNA binding protein
2
chromatin remodeller
Date released
55
November, 2017
53
May, 2020
35
May, 2021
25
August, 2017
20
May, 2022
14
August, 2021
6
July, 2019
4
January, 2018
4
March, 2020
October, 2019
1
April, 2019
1
May, 2019
1
November, 2018
Available data
384
fastq
361
bam
219
bigWig
196
tsv
180
bed narrowPeak
158
txt
153
zippedFastqFolder
121
tagAlign
40
bigBed narrowPeak
38
bed broadPeak
19
bed bedMethyl
19
bigBed bedMethyl
16
bigBed broadPeak
16
hic
15
bedpe bed3+
9
bed bed3+
8
csv
5
bed bed3
4
hdf5
3
cool
3
tar
1
bedpe
1
vcf
Organism
219
Homo sapiens
Biosample type
91
primary cell
68
cell line
59
tissue
in vitro differentiated cells
1
stem cell
Organ
94
liver
15
musculature of body
12
pancreas
8
brain
6
epithelium
4
vasculature
3
blood vessel
3
connective tissue
2
adipose tissue
1
blood
1
bodily fluid
1
heart
1
kidney
1
limb
Project
219
AMP
Genome assembly (visualization)
2559
hg19
GRCh38
1
hg18
Lab
150
AMP-T2D consortium
35
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
7
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
month_released!
October, 2019
biosample_type!
in vitro differentiated cells
assembly!
GRCh38
BIOSAMPLE
ASSAY
219 results
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ChIP-seq
ATAC-seq
FAIRE-seq
Hi-C
DNase-seq
total RNA-seq
GRO-seq
primary cell
CD8-positive, alpha-beta T cell
33
2
2
skeletal muscle myoblast
2
2
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 26 more…
cell line
HepG2
65
EndoC_BH1
2
GM12878
1
tissue
liver
8
20
skeletal muscle tissue
13
1
islet of Langerhans
6
2
1
adipose tissue
1
cingulate gyrus
1
+ See 6 more…
stem cell
hESC
1
See all biosamples
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