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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
187
DNA binding
89
Transcription
15
DNA methylation
10
DNA accessibility
Target of assay
162
histone modification
161
histone
89
broad histone mark
72
narrow histone mark
control
25
transcription factor
4
RNA binding protein
1
chromatin remodeller
Date released
686
February, 2021
335
November, 2017
318
May, 2020
301
August, 2017
272
August, 2021
October, 2019
264
May, 2021
210
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
105
July, 2019
97
May, 2019
82
November, 2018
73
September, 2018
66
April, 2019
59
September, 2020
56
March, 2020
54
November, 2019
49
April, 2018
47
October, 2018
47
September, 2023
40
May, 2024
38
December, 2017
31
December, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
November, 2020
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
223
bigWig
208
fastq
203
bam
99
bed narrowPeak
89
tsv
62
tagAlign
41
bigBed narrowPeak
40
bed broadPeak
25
bed bed3+
14
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
295
Homo sapiens
Biosample type
255
tissue
in vitro differentiated cells
46
primary cell
Organ
167
pancreas
51
adipose tissue
51
connective tissue
43
liver
23
musculature of body
17
epithelium
Project
301
AMP
Genome assembly (visualization)
225
hg19
199
GRCh38
Lab
301
AMP-T2D consortium
Audit category:
34
missing controlled_by
Audit category:
10
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
October, 2019
biosample_type!
in vitro differentiated cells
target.investigated_as!
control
BIOSAMPLE
ASSAY
301 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
35
89
1
1
liver
37
3
1
subcutaneous abdominal adipose tissue
31
3
skeletal muscle tissue
19
4
pancreas
12
+ See 4 more…
primary cell
skeletal muscle myoblast
14
1
2
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
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