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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
56
ChIP-seq
45
ATAC-seq
6
single cell RNA-seq
3
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
65
Transcription
56
DNA binding
48
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
36
histone
36
histone modification
22
broad histone mark
14
narrow histone mark
13
control
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
50
May, 2019
35
February, 2023
October, 2019
7
July, 2019
6
August, 2021
3
February, 2020
3
June, 2019
3
March, 2020
Available data
127
bam
105
bigWig
91
bed narrowPeak
66
tsv
42
bigBed narrowPeak
6
tagAlign
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
173
Homo sapiens
Biosample type
107
tissue
66
cell line
primary cell
Organ
771
liver
641
connective tissue
582
pancreas
488
adipose tissue
332
heart
299
kidney
179
brain
173
blood vessel
173
vasculature
158
bone element
116
epithelium
113
artery
82
musculature of body
61
blood
61
bodily fluid
53
limb
37
embryo
35
eye
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
173
AMP
Genome assembly (visualization)
148
GRCh38
113
hg19
Lab
173
AMP-T2D consortium
month_released!
October, 2019
biosample_type!
primary cell
BIOSAMPLE
ASSAY
173 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
1
5
36
2
aorta
1
13
4
2
1
1
ascending aorta
2
16
1
thoracic aorta
2
16
1
pulmonary artery
2
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cell line
smooth muscle cell of the coronary artery
52
6
8
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