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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
16
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
39
DNA binding
23
Transcription
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
24
control
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
Date released
27
November, 2017
17
July, 2019
12
February, 2020
October, 2019
10
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
160
bam
146
bigWig
bed narrowPeak
127
bigBed narrowPeak
80
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
25
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
72
Homo sapiens
Biosample type
62
tissue
10
primary cell
Organ
721
pancreas
604
connective tissue
477
adipose tissue
359
epithelium
349
liver
199
heart
157
kidney
151
bone element
90
vasculature
88
blood vessel
72
brain
62
artery
36
musculature of body
23
embryo
20
lung
15
blood
15
bodily fluid
11
spleen
9
limb
8
skeleton
7
eye
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
72
AMP
Genome assembly (visualization)
20
hg19
13
GRCh38
Lab
72
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
month_released!
October, 2019
biosample_type!
stem cell
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
72 results
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ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
9
1
1
cingulate gyrus
7
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
+ See 16 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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