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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
ChIP-seq
125
total RNA-seq
15
ATAC-seq
1
DNase-seq
Assay category
146
DNA binding
125
Transcription
16
DNA accessibility
Target of assay
79
histone
79
histone modification
41
narrow histone mark
37
broad histone mark
37
transcription factor
30
control
6
RNA binding protein
3
chromatin remodeller
Date released
85
May, 2021
54
August, 2017
43
December, 2017
39
February, 2018
37
August, 2021
22
February, 2021
5
November, 2019
October, 2019
2
March, 2020
Available data
287
bam
255
bigWig
141
fastq
130
bed narrowPeak
129
tsv
40
tagAlign
25
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
5
bedpe bed3+
3
txt
2
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
287
Homo sapiens
Biosample type
1721
tissue
578
primary cell
553
cell line
287
in vitro differentiated cells
3
stem cell
Organ
59
connective tissue
28
embryo
24
epithelium
15
liver
3
pancreas
1
heart
Project
287
AMP
Genome assembly (visualization)
261
GRCh38
260
hg19
Lab
287
AMP-T2D consortium
Audit category:
97
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
October, 2019
BIOSAMPLE
ASSAY
287 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
53
4
1
neural progenitor cell
20
7
10
pancreatic endoderm
18
4
cardiac precursors (cardiac muscle cell)
18
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