Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
4
ChIP-seq
1
DNAme array
1
Hi-C
Assay category
182
Transcription
172
DNA accessibility
48
DNA methylation
4
DNA binding
1
3D chromatin structure
Target of assay
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
Date released
134
May, 2022
88
February, 2023
59
September, 2020
57
May, 2020
45
February, 2021
22
May, 2021
8
January, 2021
7
August, 2020
October, 2019
1
March, 2023
1
November, 2018
1
September, 2018
Available data
183
fastq
153
zippedFastqFolder
bam
18
tsv
17
bigWig
7
bed bed3+
7
bed broadPeak
7
bed narrowPeak
7
bigBed broadPeak
7
bigBed narrowPeak
2
csv
1
hic
1
tagAlign
Organism
423
Homo sapiens
Biosample type
711
tissue
423
primary cell
70
in vitro differentiated cells
59
cell line
7
stem cell
Organ
149
epithelium
149
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
321
HPAP
77
AMP
24
T1D
1
ITG
Genome assembly (visualization)
hg19
11
GRCh38
Lab
321
Klaus Kaestner, Upenn
77
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
27
audit script error
7
inconsistent ontology term
month_released!
October, 2019
assembly!
hg19
files.file_type!
bam
BIOSAMPLE
ASSAY
423 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
ChIP-seq
DNAme array
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
42
31
pancreatic beta cell
16
11
16
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
2
+ See 23 more…
See all biosamples
Download