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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
24
ChIP-seq
16
pCHi-C
7
DNase-seq
1
DNAme array
1
Hi-C
Assay category
182
Transcription
179
DNA accessibility
48
DNA methylation
24
DNA binding
1
3D chromatin structure
Target of assay
22
control
4
histone
4
histone modification
broad histone mark
2
narrow histone mark
Date released
134
May, 2022
88
February, 2023
59
September, 2020
57
May, 2020
45
February, 2021
20
May, 2021
15
June, 2019
12
August, 2017
8
January, 2021
7
August, 2020
October, 2019
1
August, 2021
1
March, 2023
1
May, 2019
1
November, 2018
1
September, 2018
Available data
183
fastq
153
zippedFastqFolder
29
bam
18
tsv
17
bigWig
7
bed bed3+
7
bed broadPeak
7
bed narrowPeak
7
bigBed broadPeak
7
bigBed narrowPeak
2
csv
1
hic
1
tagAlign
Organism
450
Homo sapiens
Biosample type
838
tissue
450
primary cell
122
cell line
77
in vitro differentiated cells
7
stem cell
Organ
171
epithelium
161
pancreas
8
blood
8
bodily fluid
8
kidney
5
connective tissue
3
heart
2
musculature of body
1
blood vessel
1
bone element
1
bone marrow
1
eye
1
liver
1
vasculature
Project
321
HPAP
104
AMP
24
T1D
1
ITG
Genome assembly (visualization)
hg19
426
GRCh38
Lab
321
Klaus Kaestner, Upenn
104
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
27
audit script error
12
inconsistent ontology term
month_released!
October, 2019
assembly!
hg19
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
450 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
DNase-seq
DNAme array
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
42
31
6
pancreatic beta cell
16
11
16
6
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
1
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