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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
149
ATAC-seq
102
single cell RNA-seq
57
total RNA-seq
27
DNase-seq
10
RRBS
5
Hi-C
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
176
DNA accessibility
171
DNA binding
161
Transcription
11
DNA methylation
5
3D chromatin structure
Target of assay
132
histone
132
histone modification
66
broad histone mark
66
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
73
September, 2018
59
August, 2017
55
June, 2019
55
May, 2021
48
July, 2018
43
April, 2018
October, 2019
31
July, 2019
12
February, 2023
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
November, 2018
Available data
400
bigWig
398
bam
240
fastq
190
bed narrowPeak
166
tsv
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
1
bed bed3
1
bedpe bed3+
1
hic
Organism
525
Homo sapiens
Biosample type
2438
tissue
621
cell line
525
primary cell
386
in vitro differentiated cells
8
stem cell
Organ
221
epithelium
194
pancreas
38
connective tissue
25
kidney
21
brain
16
vasculature
14
musculature of body
13
heart
13
liver
10
blood vessel
5
eye
2
adipose tissue
2
artery
1
pericardium
1
vein
Project
525
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
419
hg19
323
GRCh38
Lab
490
AMP-T2D consortium
35
Kyle Gaulton, UCSD
Audit category:
47
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
October, 2019
BIOSAMPLE
ASSAY
525 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
pCHi-C
primary cell
pancreatic beta cell
13
7
12
10
pancreatic alpha cell
13
6
12
10
CD8-positive, alpha-beta T cell
33
2
2
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
5
12
4
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