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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
64
ChIP-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
10
RRBS
4
Hi-C
2
DNase-seq
1
DNAme array
Assay category
209
DNA accessibility
182
Transcription
64
DNA binding
58
DNA methylation
4
3D chromatin structure
Target of assay
34
histone
34
histone modification
29
control
22
broad histone mark
12
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
134
May, 2022
102
May, 2020
88
February, 2023
56
September, 2020
55
May, 2021
45
February, 2021
17
August, 2017
October, 2019
9
July, 2019
8
January, 2021
8
June, 2019
3
November, 2017
3
October, 2022
1
August, 2021
1
March, 2020
1
May, 2019
1
November, 2018
1
September, 2018
Available data
180
fastq
153
zippedFastqFolder
91
bigWig
75
bam
33
bed narrowPeak
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
bed bed3+
4
bedpe bed3+
4
hdf5
4
hic
3
bigBed narrowPeak
3
cool
2
bed broadPeak
2
bigBed broadPeak
2
csv
2
tagAlign
Organism
533
Homo sapiens
Biosample type
836
tissue
533
primary cell
187
cell line
119
in vitro differentiated cells
7
stem cell
Organ
167
epithelium
154
pancreas
8
blood
8
bodily fluid
5
connective tissue
5
kidney
4
brain
4
vasculature
3
heart
3
musculature of body
2
blood vessel
2
eye
2
liver
1
bone element
1
bone marrow
1
vein
Project
314
HPAP
195
AMP
24
T1D
Genome assembly (visualization)
574
hg19
GRCh38
Lab
314
Klaus Kaestner, Upenn
162
AMP-T2D consortium
57
Kyle Gaulton, UCSD
Audit category:
30
audit script error
18
inconsistent ontology term
month_released!
October, 2019
files.file_type!
bed bed3+
assembly!
GRCh38
BIOSAMPLE
ASSAY
533 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
6
31
1
pancreatic beta cell
13
11
6
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
1
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