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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
total RNA-seq
208
ChIP-seq
198
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
10
RRBS
5
Hi-C
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
432
Transcription
256
DNA accessibility
208
DNA binding
58
DNA methylation
5
3D chromatin structure
Target of assay
169
histone
169
histone modification
88
broad histone mark
81
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
204
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2020
48
July, 2018
47
August, 2017
47
February, 2021
43
April, 2018
41
September, 2018
October, 2019
31
June, 2019
27
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
546
bigWig
534
bam
365
fastq
268
tsv
242
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
Organism
975
Homo sapiens
Biosample type
2322
tissue
975
primary cell
618
cell line
355
in vitro differentiated cells
7
stem cell
Organ
333
epithelium
302
pancreas
31
connective tissue
15
kidney
13
brain
13
musculature of body
10
heart
10
vasculature
8
blood
8
bodily fluid
7
liver
6
blood vessel
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
446
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
530
hg19
442
GRCh38
Lab
413
AMP-T2D consortium
324
Klaus Kaestner, Upenn
237
Kyle Gaulton, UCSD
1
ITG
Audit category:
49
inconsistent ontology term
30
audit script error
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
October, 2019
files.file_type!
bed bed3+
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
975 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
13
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
21
13
23
12
16
1
exocrine cell
39
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