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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
total RNA-seq
236
ChIP-seq
198
ATAC-seq
185
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
RRBS
9
Hi-C
2
small RNA-seq
1
DNAme array
1
DNase-seq
Assay category
432
Transcription
255
DNA accessibility
236
DNA binding
58
DNA methylation
9
3D chromatin structure
Target of assay
202
histone
202
histone modification
104
broad histone mark
98
narrow histone mark
32
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
72
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
45
August, 2017
43
April, 2018
31
July, 2019
31
June, 2019
October, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
Available data
590
bigWig
578
bam
409
fastq
274
bed narrowPeak
268
tsv
153
zippedFastqFolder
100
tagAlign
96
bigBed narrowPeak
bed broadPeak
45
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
csv
1
bed bed3
Organism
1007
Homo sapiens
Biosample type
2320
tissue
1007
primary cell
574
cell line
385
in vitro differentiated cells
10
stem cell
Organ
355
epithelium
346
pancreas
33
connective tissue
15
kidney
13
musculature of body
11
liver
10
brain
10
heart
8
blood
8
bodily fluid
8
vasculature
6
blood vessel
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
478
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
564
hg19
471
GRCh38
Lab
443
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
49
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
month_released!
October, 2019
files.file_type!
csv
bed broadPeak
BIOSAMPLE
ASSAY
1007 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
DNase-seq
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
13
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
21
13
23
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
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