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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
255
ChIP-seq
245
total RNA-seq
159
ATAC-seq
152
single cell RNA-seq
35
snATAC-seq
27
DNase-seq
17
pCHi-C
10
RRBS
9
Hi-C
6
WGBS
2
small RNA-seq
1
DNAme array
Assay category
399
Transcription
255
DNA binding
221
DNA accessibility
17
DNA methylation
9
3D chromatin structure
Target of assay
216
histone
216
histone modification
110
broad histone mark
106
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
May, 2022
88
February, 2023
72
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
Available data
590
bigWig
578
bam
409
fastq
274
bed narrowPeak
268
tsv
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
35
bed bed3+
19
zippedFastqFolder
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
csv
1
bed bed3
Organism
918
Homo sapiens
Biosample type
2463
tissue
918
primary cell
632
cell line
386
in vitro differentiated cells
10
stem cell
Organ
293
epithelium
266
pancreas
39
connective tissue
25
kidney
21
brain
16
vasculature
14
musculature of body
13
heart
13
liver
10
blood vessel
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
523
AMP
204
T1D
190
HPAP
1
ITG
Genome assembly (visualization)
602
hg19
514
GRCh38
Lab
488
AMP-T2D consortium
239
Kyle Gaulton, UCSD
190
Klaus Kaestner, Upenn
1
ITG
Audit category:
52
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
October, 2019
May, 2022
files.file_type!
csv
BIOSAMPLE
ASSAY
918 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
WGBS
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
13
12
1
6
Langerhans cell
52
27
pancreatic beta cell
13
21
10
12
1
CD8-positive, alpha-beta T cell
33
4
2
1
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