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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
DNase-seq
19
ChIP-seq
4
Hi-C
Assay category
26
DNA accessibility
19
DNA binding
4
3D chromatin structure
Target of assay
14
histone
14
histone modification
8
narrow histone mark
6
broad histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
24
June, 2019
14
August, 2017
6
November, 2017
October, 2019
3
October, 2022
1
March, 2020
1
November, 2020
Available data
590
bigWig
578
bam
409
fastq
274
bed narrowPeak
268
tsv
153
zippedFastqFolder
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
Organism
49
Homo sapiens
Biosample type
218
tissue
60
cell line
49
primary cell
6
in vitro differentiated cells
Organ
22
epithelium
11
brain
10
kidney
9
vasculature
6
connective tissue
5
blood vessel
3
heart
3
pancreas
2
liver
1
eye
1
musculature of body
1
vein
Project
46
AMP
3
HPAP
Genome assembly (visualization)
43
GRCh38
42
hg19
Lab
46
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
month_released!
October, 2019
BIOSAMPLE
ASSAY
49 results
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DNase-seq
ChIP-seq
Hi-C
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
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