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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
ChIP-seq
3
Hi-C
2
DNase-seq
2
total RNA-seq
Assay category
3
3D chromatin structure
3
DNA binding
2
DNA accessibility
2
Transcription
Target of assay
1
RNA binding protein
1
control
1
histone
1
histone modification
1
narrow histone mark
1
transcription factor
Date released
October, 2019
4
July, 2019
3
November, 2017
2
June, 2019
1
March, 2020
Available data
9
bigWig
7
bam
4
bed bed3+
4
bed broadPeak
4
bed narrowPeak
4
bigBed broadPeak
4
bigBed narrowPeak
3
fastq
2
hdf5
2
tsv
1
bedpe bed3+
1
hic
Organism
10
Homo sapiens
Biosample type
107
tissue
66
cell line
10
primary cell
Organ
373
epithelium
346
pancreas
39
connective tissue
25
kidney
21
brain
16
vasculature
14
musculature of body
13
heart
13
liver
10
blood vessel
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
10
AMP
Genome assembly (visualization)
9
hg19
6
GRCh38
Lab
10
AMP-T2D consortium
month_released!
October, 2019
BIOSAMPLE
ASSAY
10 results
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ChIP-seq
Hi-C
DNase-seq
total RNA-seq
primary cell
brain microvascular endothelial cell
3
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
endothelial cell of umbilical vein
1
kidney capillary endothelial cell
1
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