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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
4
DNase-seq
3
Hi-C
2
total RNA-seq
1
RRBS
Assay category
6
DNA binding
4
DNA accessibility
3
3D chromatin structure
2
Transcription
1
DNA methylation
Target of assay
2
RNA binding protein
2
control
2
histone
2
histone modification
2
narrow histone mark
2
transcription factor
Date released
October, 2019
6
November, 2017
5
July, 2019
4
June, 2019
1
March, 2020
Available data
14
bigWig
12
bam
8
bed broadPeak
8
bed narrowPeak
8
bigBed broadPeak
8
bigBed narrowPeak
6
bed bed3+
6
fastq
2
hdf5
2
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
16
Homo sapiens
Biosample type
107
tissue
66
cell line
16
primary cell
Organ
373
epithelium
346
pancreas
39
connective tissue
25
kidney
21
brain
16
vasculature
14
musculature of body
13
heart
13
liver
10
blood vessel
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
16
AMP
Genome assembly (visualization)
15
hg19
10
GRCh38
Lab
16
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
October, 2019
BIOSAMPLE
ASSAY
16 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
primary cell
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
endothelial cell of umbilical vein
1
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