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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
total RNA-seq
71
ATAC-seq
70
single cell RNA-seq
68
ChIP-seq
47
WGBS
14
DNase-seq
8
snATAC-seq
6
Hi-C
6
RRBS
Assay category
161
Transcription
93
DNA accessibility
68
DNA binding
53
DNA methylation
6
3D chromatin structure
Target of assay
45
histone
45
histone modification
26
narrow histone mark
19
broad histone mark
18
control
5
RNA binding protein
5
transcription factor
Date released
80
May, 2022
61
September, 2018
37
February, 2023
33
April, 2018
33
July, 2018
October, 2019
29
August, 2017
20
June, 2019
19
September, 2020
13
July, 2019
8
January, 2021
7
August, 2020
6
February, 2021
6
November, 2017
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
Available data
238
fastq
212
bam
208
bigWig
114
tsv
86
bed narrowPeak
80
zippedFastqFolder
48
bigBed narrowPeak
19
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
4
bedpe bed3+
4
hic
4
tagAlign
3
cool
2
hdf5
Organism
381
Homo sapiens
Biosample type
381
primary cell
138
cell line
24
in vitro differentiated cells
15
tissue
Organ
373
epithelium
346
pancreas
39
connective tissue
25
kidney
21
brain
16
vasculature
14
musculature of body
13
heart
13
liver
10
blood vessel
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
221
AMP
152
HPAP
8
T1D
Genome assembly (visualization)
204
GRCh38
202
hg19
Lab
221
AMP-T2D consortium
152
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
3
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
month_released!
October, 2019
BIOSAMPLE
ASSAY
381 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
DNase-seq
snATAC-seq
Hi-C
RRBS
primary cell
pancreatic alpha cell
52
35
12
13
31
1
pancreatic beta cell
21
23
12
13
16
1
pancreatic acinar cell
4
9
12
8
1
pancreatic ductal cell
4
4
10
13
hepatocyte
5
4
1
1
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