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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
total RNA-seq
198
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
39
ChIP-seq
27
DNase-seq
17
pCHi-C
10
RRBS
9
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
434
Transcription
281
DNA accessibility
58
DNA methylation
39
DNA binding
9
3D chromatin structure
Target of assay
histone
216
histone modification
110
broad histone mark
106
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
88
February, 2023
88
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
36
June, 2019
31
July, 2019
21
August, 2017
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
396
bam
378
bigWig
336
fastq
268
tsv
153
zippedFastqFolder
74
bed narrowPeak
59
bigBed narrowPeak
32
bed bed3+
31
bed broadPeak
31
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
2
tagAlign
1
bed bed3
Organism
838
Homo sapiens
Biosample type
2076
tissue
838
primary cell
601
cell line
274
in vitro differentiated cells
8
stem cell
Organ
328
epithelium
288
pancreas
31
connective tissue
21
kidney
18
brain
14
vasculature
11
heart
10
liver
9
blood vessel
8
blood
8
bodily fluid
6
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
393
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
390
hg19
332
GRCh38
Lab
388
AMP-T2D consortium
324
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
35
inconsistent ontology term
30
audit script error
month_released!
October, 2019
target.investigated_as!
histone
BIOSAMPLE
ASSAY
838 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
52
35
12
31
6
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
16
6
1
monocyte
54
15
1
1
exocrine cell
39
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