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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1015
total RNA-seq
337
ChIP-seq
242
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
21
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1205
Transcription
337
DNA binding
271
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
160
control
155
histone modification
154
histone
84
narrow histone mark
70
broad histone mark
24
transcription factor
3
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
262
August, 2017
229
August, 2021
October, 2019
193
May, 2020
120
July, 2018
95
February, 2023
75
July, 2019
66
May, 2022
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
29
October, 2018
25
February, 2020
25
November, 2017
22
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
15
May, 2023
12
December, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1721
bam
1572
bigWig
1068
tsv
793
bed narrowPeak
bigBed narrowPeak
377
fastq
209
bed broadPeak
201
bed bed3+
189
tagAlign
172
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1978
Homo sapiens
Biosample type
1981
tissue
958
primary cell
371
in vitro differentiated cells
285
cell line
10
stem cell
Organ
536
connective tissue
478
adipose tissue
440
pancreas
306
liver
208
kidney
177
heart
158
bone element
65
blood vessel
65
vasculature
63
brain
44
musculature of body
42
artery
32
eye
20
lung
16
skeleton
15
epithelium
15
limb
12
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1884
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1149
GRCh38
1146
hg19
Lab
1669
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
9
audit script error
Audit category:
23
missing controlled_by
month_released!
October, 2019
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
1981 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
284
50
55
7
3
1
4
adipose tissue
382
1
2
3
1
liver
166
102
20
1
3
1
1
1
1
kidney
49
5
75
64
6
1
1
bone element
84
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