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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1002
total RNA-seq
594
ChIP-seq
205
ATAC-seq
147
DNase-seq
87
RNA microarray
81
single cell RNA-seq
28
snATAC-seq
19
WGBS
18
pCHi-C
15
small RNA-seq
13
Hi-C
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1098
Transcription
594
DNA binding
384
DNA accessibility
29
DNA methylation
13
3D chromatin structure
Target of assay
370
histone modification
369
histone
210
broad histone mark
159
narrow histone mark
144
control
82
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
October, 2019
193
May, 2020
137
August, 2021
136
June, 2019
120
July, 2018
94
May, 2019
82
November, 2017
74
October, 2018
66
May, 2022
59
February, 2023
57
July, 2019
48
December, 2017
47
September, 2023
40
November, 2019
38
May, 2021
33
March, 2020
26
November, 2018
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1596
bam
1462
bigWig
959
tsv
665
bed narrowPeak
426
bigBed narrowPeak
377
fastq
189
tagAlign
182
bed broadPeak
174
bed bed3+
157
txt
145
bigBed broadPeak
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2221
Homo sapiens
Biosample type
2230
tissue
1041
primary cell
566
cell line
385
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
502
pancreas
487
adipose tissue
355
liver
295
kidney
heart
179
brain
158
bone element
107
blood vessel
107
vasculature
82
musculature of body
53
limb
47
artery
35
eye
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2133
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1514
GRCh38
1487
hg19
Lab
1918
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
October, 2019
organ_slims!
heart
BIOSAMPLE
ASSAY
2230 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
284
50
55
1
7
3
1
1
4
adipose tissue
382
2
2
3
1
liver
166
140
20
2
1
3
1
1
1
1
kidney
49
23
75
13
64
6
1
1
1
bone element
84
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