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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1012
total RNA-seq
665
ChIP-seq
238
ATAC-seq
174
single cell RNA-seq
142
DNase-seq
87
RNA microarray
28
snATAC-seq
26
WGBS
21
pCHi-C
16
small RNA-seq
11
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1202
Transcription
665
DNA binding
412
DNA accessibility
37
DNA methylation
11
3D chromatin structure
Target of assay
419
histone modification
418
histone
240
broad histone mark
178
narrow histone mark
159
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
539
February, 2021
284
August, 2017
229
August, 2021
193
May, 2020
October, 2019
131
June, 2019
120
July, 2018
108
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
72
July, 2019
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1675
bam
1533
bigWig
1065
tsv
749
bed narrowPeak
476
bigBed narrowPeak
377
fastq
189
tagAlign
177
bed broadPeak
169
bed bed3+
157
txt
140
bigBed broadPeak
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2433
Homo sapiens
Biosample type
2442
tissue
1054
primary cell
632
cell line
386
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
502
pancreas
487
adipose tissue
355
liver
295
kidney
265
heart
179
brain
158
bone element
107
blood vessel
107
vasculature
82
musculature of body
limb
47
artery
35
eye
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2345
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1614
GRCh38
1548
hg19
Lab
2130
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
October, 2019
organ_slims!
limb
BIOSAMPLE
ASSAY
2442 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
284
50
55
1
7
3
1
1
4
adipose tissue
382
2
2
3
1
liver
166
140
20
1
2
3
1
1
1
1
kidney
49
23
75
64
13
6
1
1
1
bone element
84
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