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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
total RNA-seq
33
ATAC-seq
5
pCHi-C
4
GRO-seq
2
Capture-C
2
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
198
DNA binding
34
DNA accessibility
2
3D chromatin structure
2
Transcription
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
68
August, 2017
48
May, 2021
43
December, 2017
35
August, 2021
24
February, 2018
7
February, 2023
6
March, 2020
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
2
December, 2019
1
August, 2018
Available data
162
bam
130
bed narrowPeak
130
bigWig
126
fastq
40
tagAlign
25
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
bed bed3
5
bedpe bed3+
4
tsv
3
txt
2
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
247
Homo sapiens
Biosample type
1515
tissue
808
primary cell
522
cell line
247
in vitro differentiated cells
10
stem cell
Organ
81
connective tissue
23
embryo
22
epithelium
15
liver
3
pancreas
1
adipose tissue
Project
247
AMP
Genome assembly (visualization)
159
hg19
136
GRCh38
4
hg18
Lab
198
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
22
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
October, 2019
files.file_type!
bed bed3
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
247 results
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ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Capture-C
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
6
1
1
embryonic stem cell
40
6
1
neural progenitor cell
21
10
pancreatic endoderm
18
1
hepatocyte
15
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