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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
545
ChIP-seq
188
total RNA-seq
22
ATAC-seq
6
DNase-seq
4
Hi-C
4
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
545
DNA binding
192
Transcription
28
DNA accessibility
4
3D chromatin structure
4
DNA methylation
1
DNA sequencing
Target of assay
338
transcription factor
108
control
98
histone modification
97
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
39
broad histone mark
23
chromatin remodeller
other context
2
other post-translational modification
Date released
313
November, 2017
194
May, 2020
63
December, 2017
53
August, 2017
52
November, 2018
40
May, 2022
35
August, 2021
9
July, 2019
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
672
bam
614
bigWig
463
fastq
433
bed narrowPeak
356
bigBed narrowPeak
173
tsv
86
tagAlign
62
bed broadPeak
62
bigBed broadPeak
13
bed bed3+
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
779
Homo sapiens
Biosample type
398
cell line
354
tissue
15
in vitro differentiated cells
12
primary cell
Organ
922
pancreas
779
liver
677
connective tissue
488
adipose tissue
483
epithelium
377
heart
320
kidney
198
brain
187
vasculature
182
blood vessel
159
bone element
115
artery
92
musculature of body
69
blood
69
bodily fluid
52
limb
39
eye
37
embryo
20
lung
20
spleen
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
779
AMP
Genome assembly (visualization)
614
hg19
521
GRCh38
Lab
708
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
October, 2019
files.file_type!
bed bedMethyl
target.investigated_as!
other context
BIOSAMPLE
ASSAY
779 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
376
14
1
2
2
2
1
tissue
liver
140
166
20
2
1
3
1
1
1
right lobe of liver
10
3
1
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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