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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
49
total RNA-seq
23
ChIP-seq
13
DNase-seq
6
snATAC-seq
1
FAIRE-seq
1
Hi-C
1
RRBS
Assay category
113
Transcription
95
DNA accessibility
23
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
18
histone
18
histone modification
10
broad histone mark
8
narrow histone mark
4
control
1
RNA binding protein
1
transcription factor
Date released
128
August, 2021
47
September, 2023
23
April, 2019
14
May, 2023
13
June, 2019
5
February, 2021
October, 2019
2
July, 2019
1
December, 2019
Available data
96
bed narrowPeak
64
xls
62
txt
37
bam
32
bigBed narrowPeak
32
bigWig
13
bed bed3+
13
bed broadPeak
13
bigBed broadPeak
5
csv
5
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
233
Homo sapiens
Biosample type
233
tissue
Organ
233
kidney
Project
186
AMP
47
KPMP
Genome assembly (visualization)
106
GRCh38
34
hg19
Lab
142
Katalin Susztak, Upenn
47
KPMP
44
AMP-T2D consortium
Audit category:
5
audit script error
month_released!
October, 2019
files.file_type!
bed bedgraph
BIOSAMPLE
ASSAY
233 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
DNase-seq
snATAC-seq
FAIRE-seq
Hi-C
RRBS
tissue
kidney
75
64
49
23
13
6
1
1
1
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