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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
461
ChIP-seq
Assay category
461
DNA binding
111
Transcription
29
DNA accessibility
3
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
354
transcription factor
82
recombinant protein
71
control
65
RNA binding protein
31
histone
31
histone modification
30
chromatin remodeller
16
narrow histone mark
15
broad histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
60
November, 2018
27
December, 2018
October, 2019
18
August, 2021
18
January, 2019
13
November, 2019
8
February, 2021
1
March, 2020
1
May, 2021
Available data
442
bam
420
fastq
398
bigWig
379
bed narrowPeak
347
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
Organism
461
Homo sapiens
Biosample type
712
tissue
461
cell line
255
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
378
liver
60
blood
60
bodily fluid
15
epithelium
15
pancreas
6
artery
6
blood vessel
6
heart
6
vasculature
Project
459
AMP
2
T1D
Genome assembly (visualization)
394
hg19
333
GRCh38
Lab
443
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
October, 2019
files.file_type!
bed bedgraph
BIOSAMPLE
ASSAY
461 results
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Clear Filters
ChIP-seq
cell line
HepG2
378
GM12878
60
EndoC_BH1
15
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
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