Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
13
ChIP-seq
6
single cell RNA-seq
3
total RNA-seq
2
Hi-C
1
RRBS
1
WGBS
1
pCHi-C
Assay category
43
DNA accessibility
13
DNA binding
9
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
13
control
Date released
35
February, 2023
11
May, 2019
October, 2019
10
February, 2021
6
August, 2021
3
February, 2020
3
March, 2020
2
July, 2019
Available data
139
bam
bigWig
99
bed narrowPeak
68
tsv
50
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
9
bed bed3+
6
fastq
6
tagAlign
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
2
hic
Organism
70
Homo sapiens
Biosample type
58
tissue
10
cell line
2
primary cell
Organ
313
pancreas
215
kidney
213
epithelium
168
heart
168
liver
113
connective tissue
101
bone element
70
vasculature
69
blood vessel
66
adipose tissue
54
brain
51
artery
34
eye
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
14
limb
9
spleen
8
embryo
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
70
AMP
Genome assembly (visualization)
43
GRCh38
11
hg19
Lab
70
AMP-T2D consortium
month_released!
October, 2019
files.file_type!
bigWig
BIOSAMPLE
ASSAY
70 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
RRBS
WGBS
pCHi-C
tissue
coronary artery
35
2
1
aorta
2
4
1
1
1
ascending aorta
3
1
thoracic aorta
4
pulmonary artery
2
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
choroid plexus epithelial cell
1
endothelial cell of umbilical vein
1
See all biosamples
Download