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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ATAC-seq
2
Capture-C
2
pCHi-C
1
snATAC-seq
Assay category
5
DNA accessibility
Target of assay
control
Date released
4
February, 2023
2
August, 2021
2
February, 2021
1
May, 2022
Available data
bigWig
2875
bam
1628
bed narrowPeak
1581
tsv
1190
fastq
972
bigBed narrowPeak
313
bed broadPeak
290
tagAlign
276
bigBed broadPeak
256
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
9
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
cell line
1
primary cell
1
tissue
Organ
7
connective tissue
1
liver
1
musculature of body
Project
9
AMP
Genome assembly (visualization)
9
hg19
Lab
7
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
month_released!
October, 2019
files.file_type!
bigWig
target.investigated_as!
control
BIOSAMPLE
ASSAY
9 results
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ATAC-seq
Capture-C
pCHi-C
snATAC-seq
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
cell line
HepG2
1
primary cell
osteoblast
1
tissue
skeletal muscle tissue
1
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