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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
snATAC-seq
3
Hi-C
2
RNA microarray
Assay category
29
DNA accessibility
3
3D chromatin structure
Date released
27
February, 2021
3
October, 2022
2
December, 2019
1
August, 2022
1
May, 2022
October, 2019
Available data
27
fastq
7
tsv
6
txt
csv
3
bedpe bed3+
3
cool
3
hic
1
bed bed3+
Organism
34
Homo sapiens
Biosample type
30
primary cell
4
tissue
Organ
4
epithelium
4
pancreas
2
kidney
1
musculature of body
Project
30
HPAP
4
AMP
Genome assembly (visualization)
4
hg19
Lab
30
Klaus Kaestner, Upenn
4
AMP-T2D consortium
Audit category:
inconsistent ontology term
36
audit script error
28
inconsistent control
1
inconsistent replicate
month_released!
October, 2019
files.file_type!
csv
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
34 results
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snATAC-seq
Hi-C
RNA microarray
primary cell
Langerhans cell
27
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
islet of Langerhans
1
kidney interstitium
1
renal glomerulus
1
skeletal muscle tissue
1
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