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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
32
DNase-seq
16
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
54
DNA binding
36
DNA accessibility
23
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
42
histone
42
histone modification
22
broad histone mark
20
narrow histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
October, 2019
30
June, 2019
28
May, 2019
25
November, 2017
18
July, 2019
12
February, 2020
2
March, 2020
2
November, 2018
2
October, 2017
1
February, 2023
Available data
160
bam
146
bigWig
128
bed narrowPeak
127
bigBed narrowPeak
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
25
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
120
Homo sapiens
Biosample type
99
tissue
21
primary cell
Organ
832
pancreas
658
connective tissue
482
adipose tissue
405
epithelium
320
kidney
319
heart
309
liver
159
bone element
123
vasculature
120
brain
117
blood vessel
81
musculature of body
53
limb
49
artery
40
eye
29
embryo
25
spleen
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
120
AMP
Genome assembly (visualization)
88
GRCh38
74
hg19
Lab
120
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
October, 2019
files.file_type!
tagAlign
biosample_type!
cell line
BIOSAMPLE
ASSAY
120 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
1
14
1
1
temporal lobe
15
1
1
angular gyrus
13
layer of hippocampus
8
cerebellum (Hemisphere)
2
1
1
1
1
+ See 22 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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