Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1009
total RNA-seq
180
single cell RNA-seq
178
ChIP-seq
87
RNA microarray
38
ATAC-seq
28
snATAC-seq
27
WGBS
21
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1205
Transcription
178
DNA binding
67
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
117
control
44
histone
44
histone modification
26
broad histone mark
19
transcription factor
18
narrow histone mark
2
RNA binding protein
2
nucleotide modification
Date released
537
February, 2021
185
August, 2017
165
August, 2021
143
May, 2020
120
July, 2018
October, 2019
70
July, 2019
47
September, 2023
40
May, 2021
38
March, 2020
32
February, 2023
29
October, 2018
28
May, 2022
25
February, 2020
22
May, 2019
20
November, 2019
19
April, 2020
15
April, 2019
15
May, 2023
12
December, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2017
4
November, 2020
3
December, 2019
3
October, 2017
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1721
bam
1612
bigWig
1068
tsv
bed narrowPeak
514
bigBed narrowPeak
377
fastq
209
bed broadPeak
201
bed bed3+
tagAlign
172
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1616
Homo sapiens
Biosample type
1618
tissue
778
primary cell
237
cell line
234
in vitro differentiated cells
8
stem cell
Organ
525
connective tissue
467
adipose tissue
375
pancreas
204
liver
150
bone element
144
kidney
137
heart
34
brain
29
musculature of body
28
blood vessel
28
vasculature
20
lung
11
spleen
9
limb
8
skeleton
6
artery
5
eye
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1523
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
966
GRCh38
966
hg19
Lab
1408
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
21
missing controlled_by
month_released!
October, 2019
files.file_type!
tagAlign
bed narrowPeak
BIOSAMPLE
ASSAY
1618 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
RNA microarray
ATAC-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
adipose tissue
382
1
1
3
1
islet of Langerhans
278
6
27
18
7
3
1
4
liver
166
1
20
3
1
1
1
1
kidney
49
64
5
11
6
1
1
bone element
84
+ See 82 more…
See all biosamples
Download