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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
DNase-seq
111
ChIP-seq
2
ATAC-seq
Assay category
192
DNA accessibility
111
DNA binding
Target of assay
62
histone
62
histone modification
49
transcription factor
34
broad histone mark
28
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
181
June, 2019
70
November, 2017
39
August, 2017
October, 2019
8
November, 2018
4
October, 2017
1
March, 2019
Available data
2549
bam
2355
bigWig
1513
bed narrowPeak
1257
fastq
1106
tsv
947
bigBed narrowPeak
327
tagAlign
303
bed broadPeak
267
bigBed broadPeak
238
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
19
bedpe bed3+
19
hic
8
csv
6
bed bed3
3
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
vcf
Organism
297
Homo sapiens
Biosample type
206
tissue
58
cell line
39
primary cell
Organ
78
kidney
63
liver
47
brain
46
musculature of body
32
limb
30
heart
20
pancreas
18
epithelium
18
ureter
11
vasculature
connective tissue
7
blood vessel
4
eye
3
adipose tissue
2
artery
1
spleen
Project
303
AMP
Genome assembly (visualization)
280
hg19
266
GRCh38
Lab
301
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
month_released!
October, 2019
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
303 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 41 more…
cell line
HepG2
58
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
+ See 13 more…
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