Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
ChIP-seq
19
ATAC-seq
1
DNase-seq
Assay category
110
DNA binding
20
DNA accessibility
Target of assay
78
histone
78
histone modification
40
narrow histone mark
37
broad histone mark
32
transcription factor
6
RNA binding protein
3
chromatin remodeller
Date released
43
August, 2017
34
December, 2017
25
August, 2021
16
February, 2018
5
May, 2021
5
November, 2019
2
February, 2023
October, 2019
Available data
287
bam
255
bigWig
141
fastq
130
bed narrowPeak
129
tsv
40
tagAlign
25
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
5
bedpe bed3+
3
txt
2
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
130
Homo sapiens
Biosample type
793
tissue
389
cell line
274
primary cell
130
in vitro differentiated cells
2
stem cell
Organ
45
connective tissue
18
epithelium
14
embryo
14
liver
2
pancreas
Project
130
AMP
Genome assembly (visualization)
129
hg19
126
GRCh38
Lab
126
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
Audit category:
17
inconsistent control read length
month_released!
October, 2019
BIOSAMPLE
ASSAY
130 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
42
1
1
neural progenitor cell
13
10
hepatocyte
14
pancreatic endoderm
12
definitive endodermal cell
6
+ See 11 more…
See all biosamples
Download