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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
408
ChIP-seq
28
DNase-seq
22
ATAC-seq
Assay category
408
DNA binding
50
DNA accessibility
Target of assay
340
transcription factor
81
recombinant protein
73
RNA binding protein
63
histone
63
histone modification
33
narrow histone mark
32
chromatin remodeller
30
broad histone mark
2
other context
2
other post-translational modification
Date released
255
November, 2017
56
November, 2018
47
June, 2019
27
December, 2018
October, 2019
20
August, 2017
15
January, 2019
14
December, 2017
14
September, 2018
5
September, 2017
4
May, 2019
1
November, 2020
Available data
1421
bam
1350
bigWig
981
fastq
795
bed narrowPeak
516
tsv
458
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
104
bed broadPeak
104
bigBed broadPeak
64
bed bed3+
11
bed bedMethyl
11
bedpe bed3+
11
bigBed bedMethyl
9
hic
7
bed bed3
7
bed bedgraph
4
hdf5
4
txt
3
cool
3
tar
2
csv
2
ibed
1
vcf
Organism
458
Homo sapiens
Biosample type
tissue
347
cell line
96
primary cell
15
in vitro differentiated cells
Organ
309
liver
62
epithelium
54
blood
54
bodily fluid
22
pancreas
16
connective tissue
16
kidney
11
brain
9
musculature of body
8
vasculature
6
heart
4
blood vessel
3
eye
Project
458
AMP
Genome assembly (visualization)
447
hg19
423
GRCh38
Lab
458
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
month_released!
October, 2019
biosample_type!
tissue
BIOSAMPLE
ASSAY
458 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
293
GM12878
54
primary cell
skeletal muscle myoblast
14
2
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
+ See 23 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
1
See all biosamples
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