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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
679
ChIP-seq
201
DNase-seq
24
ATAC-seq
4
FAIRE-seq
Assay category
679
DNA binding
229
DNA accessibility
Target of assay
400
transcription factor
274
histone
274
histone modification
167
broad histone mark
107
narrow histone mark
90
RNA binding protein
81
recombinant protein
34
chromatin remodeller
5
other context
5
other post-translational modification
Date released
312
November, 2017
210
June, 2019
97
May, 2019
73
November, 2018
October, 2019
April, 2019
50
December, 2017
45
October, 2018
42
August, 2017
30
December, 2018
21
January, 2019
14
September, 2018
6
October, 2017
5
September, 2017
2
July, 2019
1
November, 2020
Available data
3063
bam
2857
bigWig
1584
tsv
1523
bed narrowPeak
1358
fastq
908
bigBed narrowPeak
349
tagAlign
313
bed broadPeak
276
bigBed broadPeak
265
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
902
Homo sapiens
Biosample type
450
tissue
347
cell line
96
primary cell
15
in vitro differentiated cells
Organ
358
liver
127
brain
85
kidney
84
pancreas
62
epithelium
54
blood
54
bodily fluid
50
vasculature
48
heart
47
musculature of body
46
blood vessel
38
limb
25
connective tissue
18
ureter
13
spleen
9
adipose tissue
6
eye
5
artery
Project
908
AMP
Genome assembly (visualization)
868
GRCh38
829
hg19
Lab
908
AMP-T2D consortium
Audit category:
28
inconsistent control
24
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
31
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
month_released!
October, 2019
April, 2019
BIOSAMPLE
ASSAY
908 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
38
2
body of pancreas
26
4
brain
6
14
muscle of leg
6
13
heart
18
+ See 51 more…
cell line
HepG2
293
GM12878
54
primary cell
skeletal muscle myoblast
14
2
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
+ See 23 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
1
See all biosamples
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