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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
86
ChIP-seq
1
FAIRE-seq
Assay category
197
DNA accessibility
86
DNA binding
Target of assay
67
transcription factor
25
RNA binding protein
19
histone
19
histone modification
15
recombinant protein
11
narrow histone mark
8
broad histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
312
November, 2017
210
June, 2019
97
May, 2019
73
November, 2018
October, 2019
64
April, 2019
50
December, 2017
45
October, 2018
42
August, 2017
30
December, 2018
21
January, 2019
14
September, 2018
6
October, 2017
5
September, 2017
2
July, 2019
1
November, 2020
Available data
305
bam
290
bigWig
283
bed narrowPeak
283
bigBed narrowPeak
196
bed bed3+
196
bed broadPeak
196
bigBed broadPeak
88
fastq
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
283
Homo sapiens
Biosample type
180
tissue
56
cell line
47
primary cell
Organ
80
kidney
53
liver
41
musculature of body
33
heart
32
brain
32
limb
18
epithelium
18
ureter
16
connective tissue
12
blood
12
bodily fluid
7
pancreas
7
vasculature
6
eye
5
blood vessel
4
spleen
2
adipose tissue
2
artery
Project
283
AMP
Genome assembly (visualization)
282
GRCh38
258
hg19
Lab
283
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
October, 2019
BIOSAMPLE
ASSAY
283 results
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Clear Filters
DNase-seq
ChIP-seq
FAIRE-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
cell line
HepG2
44
GM12878
12
primary cell
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
cardiac muscle cell
1
2
epithelial cell of proximal tubule
1
2
+ See 17 more…
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