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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
19
Hi-C
Assay category
60
DNA accessibility
52
Transcription
41
DNA methylation
19
3D chromatin structure
Date released
134
May, 2022
19
September, 2020
10
March, 2020
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
March, 2019
1
March, 2023
Available data
3142
bam
2962
bigWig
1628
bed narrowPeak
1584
tsv
1358
fastq
972
bigBed narrowPeak
349
tagAlign
313
bed broadPeak
276
bigBed broadPeak
265
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
172
Homo sapiens
Biosample type
158
primary cell
10
tissue
2
cell line
2
in vitro differentiated cells
Organ
87
pancreas
85
epithelium
2
blood vessel
2
heart
2
liver
2
musculature of body
2
vasculature
1
kidney
1
vein
Project
156
HPAP
15
AMP
1
ITG
Genome assembly (visualization)
18
hg19
1
GRCh38
Lab
156
Klaus Kaestner, Upenn
12
AMP-T2D consortium
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
3
audit script error
3
inconsistent ontology term
month_released!
October, 2019
BIOSAMPLE
ASSAY
172 results
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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
1
pancreatic beta cell
16
13
1
pancreatic acinar cell
4
1
chondrocytes
1
+ See 1 more…
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart left ventricle
1
heart right ventricle
1
+ See 3 more…
cell line
EndoC_BH1
1
HepG2
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
See all biosamples
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