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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
Hi-C
Assay category
12
3D chromatin structure
Date released
10
March, 2020
October, 2019
2
November, 2019
Available data
2937
bam
2652
bigWig
1472
tsv
1354
bed narrowPeak
1163
fastq
972
bigBed narrowPeak
311
bed broadPeak
276
bigBed broadPeak
265
tagAlign
261
bed bed3+
95
txt
36
bed bedMethyl
36
bigBed bedMethyl
15
bedpe bed3+
12
bed bed3
12
hic
8
csv
4
bed bedgraph
4
hdf5
3
tar
2
ibed
Organism
12
Homo sapiens
Biosample type
8
tissue
2
in vitro differentiated cells
1
cell line
1
primary cell
Organ
3
pancreas
2
blood vessel
2
epithelium
2
heart
2
musculature of body
2
vasculature
1
liver
1
vein
Project
12
AMP
Genome assembly (visualization)
12
hg19
Lab
12
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
3
inconsistent ontology term
month_released!
October, 2019
BIOSAMPLE
ASSAY
12 results
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Hi-C
tissue
psoas muscle
2
aorta
1
heart left ventricle
1
heart right ventricle
1
islet of Langerhans
1
+ See 2 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
primary cell
endothelial cell of umbilical vein
1
See all biosamples
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