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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
Hi-C
Assay category
15
3D chromatin structure
Date released
7
March, 2020
3
October, 2022
2
August, 2021
1
March, 2019
1
March, 2023
1
November, 2019
October, 2019
Available data
2951
bam
2784
bigWig
1578
bed narrowPeak
1439
tsv
1347
fastq
948
bigBed narrowPeak
346
tagAlign
309
bed broadPeak
272
bigBed broadPeak
259
bed bed3+
153
zippedFastqFolder
76
txt
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
15
hic
14
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
4
hdf5
3
cool
3
tar
1
bedpe
1
vcf
Organism
15
Homo sapiens
Biosample type
10
tissue
4
primary cell
1
cell line
Organ
6
pancreas
4
epithelium
2
blood vessel
2
heart
2
liver
2
musculature of body
2
vasculature
1
kidney
vein
Project
11
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
14
hg19
1
GRCh38
Lab
8
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
3
audit script error
inconsistent ontology term
month_released!
October, 2019
organ_slims!
vein
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
15 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart left ventricle
1
heart right ventricle
1
+ See 3 more…
primary cell
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
1
See all biosamples
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