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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
32
DNase-seq
16
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
134
DNA binding
35
DNA accessibility
23
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
110
histone
110
histone modification
67
broad histone mark
43
narrow histone mark
24
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
October, 2019
30
June, 2019
28
May, 2019
18
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
February, 2023
Available data
160
bam
146
bigWig
128
bed narrowPeak
127
bigBed narrowPeak
80
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
25
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
Organism
199
Homo sapiens
Biosample type
178
tissue
21
primary cell
Organ
871
pancreas
784
liver
666
connective tissue
489
adipose tissue
437
epithelium
349
heart
324
kidney
199
brain
154
vasculature
151
bone element
148
blood vessel
96
musculature of body
80
artery
69
blood
69
bodily fluid
53
limb
37
embryo
25
spleen
20
lung
18
ureter
9
eye
8
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
199
AMP
Genome assembly (visualization)
139
GRCh38
85
hg19
Lab
199
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
October, 2019
February, 2023
lab.title!
Maike Sander, UCSD
BIOSAMPLE
ASSAY
199 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
15
14
1
layer of hippocampus
22
caudate nucleus
15
1
1
temporal lobe
15
1
1
substantia nigra
15
1
+ See 23 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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