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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
32
DNase-seq
16
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
67
DNA binding
36
DNA accessibility
23
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
110
histone
110
histone modification
broad histone mark
43
narrow histone mark
24
control
3
RNA binding protein
3
transcription factor
Date released
October, 2019
49
November, 2017
30
June, 2019
18
July, 2019
13
May, 2019
12
February, 2020
6
October, 2017
2
March, 2020
2
November, 2018
1
February, 2023
Available data
102
bam
89
bigWig
70
bed narrowPeak
69
bigBed narrowPeak
43
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
35
tagAlign
25
tsv
15
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
133
Homo sapiens
Biosample type
112
tissue
21
primary cell
Organ
853
pancreas
745
liver
636
connective tissue
470
adipose tissue
457
epithelium
331
heart
312
kidney
167
vasculature
161
blood vessel
159
bone element
133
brain
115
artery
76
musculature of body
69
blood
69
bodily fluid
49
limb
40
eye
33
embryo
21
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
133
AMP
Genome assembly (visualization)
81
GRCh38
64
hg19
Lab
133
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
month_released!
October, 2019
lab.title!
Maike Sander, UCSD
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
133 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
5
14
1
1
layer of hippocampus
10
caudate nucleus
7
1
1
temporal lobe
7
1
1
substantia nigra
7
1
+ See 23 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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