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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
single cell RNA-seq
49
total RNA-seq
7
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
Assay category
113
Transcription
7
DNA accessibility
7
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
6
control
1
RNA binding protein
1
transcription factor
Date released
66
August, 2021
47
September, 2023
8
February, 2021
October, 2019
5
April, 2019
5
July, 2019
3
December, 2019
3
May, 2023
2
March, 2020
1
June, 2019
1
May, 2019
Available data
62
txt
12
tsv
8
bam
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
bed narrowPeak
1
bigBed narrowPeak
1
bigWig
1
hic
Organism
141
Homo sapiens
Biosample type
132
tissue
5
primary cell
4
cell line
Organ
300
pancreas
260
liver
218
epithelium
141
kidney
126
heart
114
connective tissue
93
bone element
66
adipose tissue
61
brain
43
musculature of body
34
eye
31
vasculature
29
blood vessel
20
lung
15
blood
15
bodily fluid
9
limb
9
spleen
8
artery
8
embryo
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
94
AMP
47
KPMP
Genome assembly (visualization)
GRCh38
107
hg19
Lab
67
Katalin Susztak, Upenn
47
KPMP
25
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
audit script error
5
inconsistent ontology term
month_released!
October, 2019
lab.title!
Maike Sander, UCSD
assembly!
GRCh38
BIOSAMPLE
ASSAY
141 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
tissue
kidney
64
49
5
6
1
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
+ See 1 more…
primary cell
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
cell line
HEK293T
2
RCC 7860 VHL
1
RCC 7860 vector
1
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