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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
ChIP-seq
Assay category
479
Transcription
205
DNA binding
168
DNA accessibility
53
DNA methylation
8
3D chromatin structure
Target of assay
144
histone
144
histone modification
74
broad histone mark
70
narrow histone mark
42
control
19
transcription factor
9
RNA binding protein
Date released
94
August, 2017
51
October, 2018
32
September, 2018
13
November, 2019
October, 2019
6
September, 2017
4
May, 2021
3
March, 2020
2
May, 2019
Available data
185
bam
155
bigWig
147
fastq
134
bed narrowPeak
53
bigBed narrowPeak
21
bed bed3+
19
tagAlign
12
bed broadPeak
Organism
198
Homo sapiens
Biosample type
117
tissue
70
primary cell
15
cell line
3
in vitro differentiated cells
Organ
547
liver
205
pancreas
152
connective tissue
134
brain
129
heart
105
epithelium
73
adipose tissue
62
vasculature
60
blood
60
bodily fluid
59
blood vessel
39
musculature of body
31
kidney
22
embryo
20
spleen
11
artery
7
limb
3
eye
Project
201
AMP
4
T1D
Genome assembly (visualization)
157
hg19
151
GRCh38
Lab
205
AMP-T2D consortium
Audit category:
15
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
month_released!
October, 2019
lab.title!
Maike Sander, UCSD
BIOSAMPLE
ASSAY
205 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
50
body of pancreas
35
endocrine pancreas
16
pancreas
16
primary cell
pancreatic endocrine cell
23
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
pancreatic acinar cell
8
cell line
EndoC_BH1
15
in vitro differentiated cells
pancreatic PP cell
3
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