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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
DNase-seq
77
ChIP-seq
8
single cell RNA-seq
Assay category
199
DNA accessibility
77
DNA binding
8
Transcription
Target of assay
49
transcription factor
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
64
November, 2017
15
August, 2017
10
November, 2018
October, 2019
6
February, 2021
1
November, 2020
1
September, 2018
Available data
3142
bam
2957
bigWig
1624
bed narrowPeak
1584
tsv
1358
fastq
972
bigBed narrowPeak
349
tagAlign
313
bed broadPeak
276
bigBed broadPeak
263
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
4
bed bedgraph
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
284
Homo sapiens
Biosample type
178
tissue
58
cell line
47
primary cell
1
in vitro differentiated cells
Organ
83
kidney
64
liver
38
brain
33
musculature of body
32
limb
30
heart
18
epithelium
18
ureter
11
vasculature
9
connective tissue
7
blood vessel
6
pancreas
4
eye
2
adipose tissue
2
artery
1
spleen
Project
284
AMP
Genome assembly (visualization)
260
GRCh38
253
hg19
Lab
284
AMP-T2D consortium
Audit category:
5
audit script error
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
month_released!
October, 2019
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
284 results
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DNase-seq
ChIP-seq
single cell RNA-seq
tissue
heart
18
kidney
13
5
muscle of arm
17
brain
14
muscle of leg
13
+ See 37 more…
cell line
HepG2
58
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 18 more…
in vitro differentiated cells
adipocyte
1
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