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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
408
ChIP-seq
22
ATAC-seq
5
DNase-seq
Assay category
408
DNA binding
27
DNA accessibility
Target of assay
329
transcription factor
81
recombinant protein
76
histone modification
75
histone
56
RNA binding protein
49
narrow histone mark
26
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
249
November, 2017
51
November, 2018
50
December, 2017
27
May, 2020
20
May, 2022
18
August, 2017
17
August, 2021
October, 2019
2
June, 2019
1
February, 2021
Available data
674
bam
616
bigWig
465
fastq
435
bed narrowPeak
358
bigBed narrowPeak
173
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
435
Homo sapiens
Biosample type
308
cell line
108
tissue
14
in vitro differentiated cells
5
primary cell
Organ
435
liver
207
pancreas
186
heart
167
kidney
130
epithelium
128
brain
99
vasculature
95
blood vessel
73
connective tissue
60
musculature of body
54
blood
54
bodily fluid
53
artery
44
limb
33
eye
18
ureter
14
embryo
14
spleen
13
adipose tissue
8
bone element
8
skeleton
Project
435
AMP
Genome assembly (visualization)
431
hg19
361
GRCh38
Lab
401
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
month_released!
October, 2019
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
435 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
307
1
tissue
liver
77
20
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
1
hepatic stellate cell
1
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