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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
529
ChIP-seq
159
total RNA-seq
6
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
ATAC-seq
2
RRBS
1
single cell RNA-seq
Assay category
529
DNA binding
163
Transcription
8
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
327
transcription factor
104
control
95
histone modification
94
histone
82
recombinant protein
57
RNA binding protein
56
narrow histone mark
38
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
10
July, 2019
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
674
bam
582
bigWig
465
fastq
401
bed narrowPeak
358
bigBed narrowPeak
164
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
713
Homo sapiens
Biosample type
370
cell line
315
tissue
15
in vitro differentiated cells
13
primary cell
Organ
713
liver
707
pancreas
675
connective tissue
490
adipose tissue
345
heart
331
epithelium
200
brain
189
vasculature
183
blood vessel
158
bone element
133
kidney
115
artery
96
musculature of body
61
blood
61
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
18
ureter
16
skeleton
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
713
AMP
Genome assembly (visualization)
583
hg19
524
GRCh38
Lab
713
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
October, 2019
BIOSAMPLE
ASSAY
713 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
ATAC-seq
RRBS
single cell RNA-seq
cell line
HepG2
360
5
1
1
2
1
tissue
liver
140
146
2
3
1
1
1
1
1
right lobe of liver
10
3
2
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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